2006 publications:
- Hu, X.; Wang, Y. Molecular dynamic simulations of N-terminal receiver domain of NtrC reveal intrinsic conformational flexibility in the inactive state, J. Biomolec. Struct. & Dynamic. (in press).
- Tsukahara, T.; Tsukahara, R.; Yasuda, S.; Makarova, N.; Valentine, W.J.; Allison, P.; Yuan, H.; Baker, D.L.; Li, Z.; Bittman, R.; Parrill, A.; Tigyi, G. Different Residues Mediate Recognition of 1-O-oleyl-lysophosphatidic Acid and Rosiglitazone in the Ligand Binding Domain of PPARg1, J. Biol. Chem. (2006) 281(6), 3398-3407.
- Durgam, G.; Tsukahara, R.; Makarova, N.; Fujiwara, Y.; Pigg, K.R.; Baker, D.L.; Sardar, V.M.; Parrill, A.L.; Tigyi, G.; Miller, D.D. Synthesis and Pharmacological Evaluation of Second-Generation Phosphatidic Acid Derivatives as Lysophosphatidic Acid Receptor Ligands, Bioorg. Med. Chem. Letters, (2006) 16(3), 633-640.
- Laradji, M.; Sunil Kumar, P. B. Anomalously Slow Domain Growth in Fluid Membranes with Asymmetric Transbilayer Lipid Distribution, Phys. Rev. E (in press)
- Sunil Kumar, P. B.; Laradji, M. Phase separation in two-component fluid vesicles, Proc. Mathematical Biology: Recent Trends, Eds. P. Chandra and B.V.R. Kum, pp. 44-55 (2006)
2005 publications:
- Labello, N. P.; Ferreira, A. M.; Kurtz, H. A. An Augmented Effective Core Potential Basis Set for the Calculation of Molecular Polarizabilities, J. Comp. Chem. (2005) 26, 1464-1471.
- Laradji, M.; Sunil Kumar, P. B. Domain growth, budding, and fission in phase-separating self-assembled fluid membranes, J. Chem. Phys. (2005) 123, 224902
- Hore, M. J. A.; Laradji, M. Effects of nanoscale rods on the kinetics of phase-separating multi-component fluids, Mater. Res. Soc. Symp. Proc. (2005) 856E, BB7.7, 1-6
- Fujiwara, Y.; Sardar, V.; Tokumura, A.; Baker, D.; Murakami-Murofushi, K.; Parrill, A.; Tigyi, G. Identification of Residues Responsible for Ligand Recognition and Regioisomeric Selectivity of LPA Receptors Expressed in Mammalian Cells, J. Biol. Chem. (2005) 280(41), 35038-35050.
- Parrill, A.L. Structural Characteristics of Lysophosphatidic Acid Biological Targets, Biochem. Soc. Trans. (2005) 33(pt 6), 1366-1369.
- Jo, E.; Sanna, M. G.; Gonzalez-Cabrera, P. J.; Thangada, S.; Tigyi, G.; Osborne, D. A.; Hla, T.; Parrill, A. L.; Rosen, H. S1P1-selective in vivo-active agonists from high throughput screening: Off-the-shelf chemical probes of receptor interactions, signaling and fate. Chemistry & Biology (2005) 12, 703-715.
- Inagaki, Y.; Pham, T.C.T.; Fujiwara, Y.; Kohno, T.; Osborne, D.A.; Igarashi, Y.; Tigyi, G.; Parrill, A.L. Sphingosine-1-Phosphate Analog Recognition and Selectivity at S1P4 within the Endothelial Differentiation Gene Family of Receptors. Biochem. J. (2005) 12, 703-715.
- Yuan, H.; Parrill, A. L. "Cluster Analysis and Three-dimensional QSAR Studies of HIV-1 Integrase Inhibitors", J. Mol. Graphics Model. (2005) 23, 317-328.
- Jiang, W.; Khan, S.; Wang, Y. Retention behaviors of block copolymers in liquid chromatography at the critical condition." Macromolecules (2005), 38, 7514-7520.
- Ziebarth, J.; Orelli, S.; Wang, Y.; The adsorption and partitioning of self-avoiding walk chains into pores from a bulk theta solution. Polymer (2005), 46, 10450-10456.
- Wang, Y.; Jernigan, R. L.; Comparison of tRNA motions in the free and ribosomal bound structures. Biophysics (2005), 89, 3399-3409.
- Hu, X.; Wang, Y.; Molecular dynamic simulations of N-terminal receiver domain of NtrC reveal intrinsic conformational flexibility in the inactive state. J. Biomolec. Struct. & Dynamic. (in press).
- Jo, E.; Sanna, M.G.; Gonzalez-Cabrera, P.J.; Thangada, S.; Tigyi, G.;
Osborne, D.A.; Hla, T.; Parrill, A.L.; Rosen, H. S1P1-selective
in vivo-active agonists from high throughput screening: Off-the-shelf
chemical probes of receptor interactions, signaling and fate, Chemistry &
Biology (2005), in press.
- Inagaki, Y.; Pham, T.C.T.; Fujiwara, Y.; Kohno, T.; Osborne, D.A.;
Igarashi, Y.; Tigyi, G.; Parrill, A.L. Sphingosine-1-Phosphate Analog
Recognition and Selectivity at S1P4 within the Endothelial
Differentiation Gene Family of Receptors, Biochem. J. (2005), in press.
- Yuan, H.; Parrill, A. Cluster Analysis and three-dimensional
QSAR studies of HIV-1 integrase inhibitors, Journal of Molecular Graphics
and Modelling (2005), 23, 317-328.
2004 publications:
- Kumar, N.; Tomar, A.; Parrill, A.L.; Khurana, S. Functional
dissection and molecular characterization of calcium-sensitive actin-capping
and actin-depolymerizing sites in villin, J. Biol. Chem. (2004), 279(43),
45036-45046.
- Holdsworth, G.; Osborne, D.A.; Pham, T.C.T.; Fells, J. I.; Hutchinson,
G.; Milligan, G.; Parrill, A.L., A single amino acid determines
preference between phospholipids and reveals length restriction for
activation of the S1P4 receptor, BMC Biochemistry (2004), 5:12.
- Parrill, Abby L.; Sardar, Vineet M.; Yuan, Hongbin. Sphingosine
1-phosphate and lysophosphatidic acid receptors: agonist and antagonist
binding and progress toward development of receptor-specific ligands.
Seminars in Cell & Developmental Biology (2004), 15(5), 467-476.
- Teraoka, Iwao; Wang, Yongmei. Computer simulation studies on
overlapping polymer chains confined in narrow channels. Polymer (2004),
45(11), 3835-3843.
- Wang, Yongmei. Confinement free energy and chain conformations of
homopolymers confined between two repulsive walls. Journal of Chemical
Physics (2004), 121(8), 3898-3904.
- Jiang, Wenhua; Wang, Yongmei. Thermodynamics and partitioning of
homopolymers into a slit-A grand canonical Monte Carlo simulation study.
Journal of Chemical Physics (2004), 121(8), 3905-3913.
- Wang, Yongmei; Rader, A. J.; Bahar, Ivet; Jernigan, Robert L. Global
Ribosome Motions Revealed with Elastic Network Model. Journal of
Structural Biology (2004), 147(3), 302-314.
- Wang, Yongmei; Howard, Derek; Gong, Yingchuan. Partitioning of Polymers into
Pores with
Surface Interactions at Dilute Solution Limit. Polymer (2004), 45, 313-320.
- Wilburn, Jeremy P.; Ciobanu, Madalina; Buss, N.I.; Franceschetti, Donald
R.;
Lowy, Daniel A. Miniaturized Reference Electrodes with Stainless Steel
Internal Reference Elements. Analytica Chimica Acta (2004), 511(1), 83-89.
- Ferreira, Antonio M.; Moore, Bob M.; Krishnamurthy, Mathangi.
Theoretical Analysis of the NMR and Electronic Structure of Novel
D8–THC Derivatives. Theochem (2004), 674(1-3),
131-138.
- Laradji, Mohamed; Hore, M.J.A. Nanospheres in Phase-Separating
Multicomponent Fluids: A Three-Dimensional Dissipative Particle
Dynamics Simulation. Journal of Chemical Physics (2004), 121,
10641-10647.
- Laradji, Mohamed. A Monte Carlo Study of Fluctuating
Polymer-Grafted Membranes, Journal of Chemical Physics (2004), 121(3),
1591-1600.
- Laradji, Mohamed; Kumar, P. B. Sunil. Dynamics of Domain Growth
in Self-Assembled Fluid Vesicles. Physical Review Letters (2004) ,
93(19), 198105/1-198105/4.
- Laradji, Mohamed. A Langevin Dynamics Study of Mobile Filler
Particles in Phase-Separating Binary Systems. Journal of Chemical
Physics (2004), 120(19), 9330-9334.
2003 publications:
- Parrill, A. L.. HIV-1 Integrase Inhibition: Binding sites, Structure
Activity Relationships and Future Perspectives. Current Medicinal
Chemistry (2003), 10(18), 1811-1824.
- Virag, Tamas; Elrod, Don B.; Liliom, Karoly; Sardar, Vineet M.;
Parrill, Abby L.; Yokoyama, Kazuaki; Durgam, Gangadhar; Deng, Wenlin;
Miller, Duane D.; Tigyi, Gabor. Fatty Alcohol Phosphates are
Subtype-selective Agonists and Antagonists of Lysophosphatidic Acid
Receptors. Molecular Pharmacology (2003), 63(5), 1032-1042.
- Tigyi, Gabor; Parrill, Abby L. Molecular Mechanisms of Lysophosphatidic
Acid Action. Progress in Lipid Research (2003), 42(6), 498-526.
- Nadipuram, Asha K.; Krishnamurthy, Mathangi; Ferreira, Antonio M.; Li,
Wei; Moore, Bob M. Synthesis and Testing of Novel Classical Cannabinoids:
Exploring the Side Chain Ligand Binding Pocket of the CB1 and CB2
Receptors. Bioorganic & Medicinal Chemistry (2003), 11(14), 3121-3132.
- Krishnamurthy, Mathangi; Ferreira, Antonio M.; Moore, Bob M. Synthesis
and Testing of Novel Phenyl Substituted Side-chain Analogues of Classical
Cannabinoids. Bioorganic & Medicinal Chemistry Letters (2003), 13(20),
3487-3490.
- Laradji, Mohamed; MacNevin, Grant. Phase Separation Dynamics in
Binary Fluids Containing Quenched or Mobile Filler Particles.
Journal of Chemical Physics (2003), 119(4), 2275-2283.
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- Parrill, 2009, NIH ARRA Supplements
- Parrill, 2009, The University of Memphis, Faculty Research Grant
- Burkey and Webster, 2009, National Science Foundation Grant
- Parrill and Webster, 2009, National Science Foundation REU Grant
- Webster, 2008, Conoco Phillips Contract
- Parrill, 2008, Elsa Pardee Foundation Grant
- Wang, 2007, National Science Foundation Grant
- Webster, 2007, Advanced Technology Materials, Inc. Contract
- Webster, 2007, The University of Memphis, Faculty Research Grant
- Fells and Parrill, 2007, American Heart Association Predoctoral Fellowship
- Parrill, 2007, National Science Foundation MRI Grant
- Parrill, 2007, National Institutes of Health Diversity Supplement
- Parrill, 2007, The University of Memphis, Atkins Professorship
- Wang, 2007, American Chemical Society Petroleum Research Fund Grant
- Wang, 2006, The University of Memphis, Donovan Travel Award
- Parrill, 2006-2011, National Institutes of Health Grant
- Parrill (co-investigator), 2006, National Science Foundation MRI grant
- Parrill, 2006-2008, University of Tennessee Health Science Center Subcontract (National Institutes of Health Grant)
- Wang, 2006, National Institutes of Health Grant
- Wang, 2005, The University of Memphis, Faculty Research Grant
- Marino, 2004, U.S. Department of Energy Grant
- Ermler, 2003, U.S. Department of Energy Grant
- Marino, 2003, U.S. Department of Energy Grant
- Ermler, 2003, National Science Foundation Intergovernmental Personnel Assignment
- Ermler, 2002, U.S. Department of Energy Grant
- Kurtz, 2002, Air Force Research Laboratory Grant
- Ermler, 2002, National Science Foundation Intergovernmental Personnel Assignment
- Cundari, 2002, U.S. Department of Energy Grant
- Cundari, 2002, National Science Foundation Grant
- Parrill, 2001, The University of Memphis, Sigma Xi Chapter Research Paper Award
- Cundari, 2001, National Science Foundation Grant
- Ermler, 2001, National Science Foundation Intergovernmental Personnel Assignment
- Cundari, 2000, National Science Foundation Grants
- Cundari, 2000, U.S. Department of Energy Grant
- Parrill, 2000-2005, University of Tennessee Health Science Center Subcontract (National Institutes of Health Grant)
- Parrill, 2000-2003, American Heart Association Grant
- Parrill, 2000, The University of Memphis, College of Arts and Sciences Early Career Research Award
- Parrill, 1999-2002, National Institutes of Health Grant
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